Aptamer Functionalised Small Gold Nanorod-Based Nanoprobes: Targeting EpCAM Over-expressed Cancer Cells for Photothermal Therapy

Research Article

Austin J Anal Pharm Chem. 2024; 11(1): 1170.

Aptamer Functionalised Small Gold Nanorod-Based Nanoprobes: Targeting EpCAM Over-expressed Cancer Cells for Photothermal Therapy

Mbalaha ZS1,2; Craig G1,3; Birch DJS1; Chen Y1*

1Department of Physics, Scottish Universities Physics Alliance, University of Strathclyde, 107 Rottenrow, Glasgow G4 0NG, UK

2Joseph Sarwuan Tarka University, Makurdi, P.M.B. 2373, Makurdi, Benue state, Nigeria

3Tayside Clinical Trials Unit, Tayside Medical Science Centre, Ninewells Hospital & Medical School, University of Dundee, George Pirie Way, Dundee, DD1 9SY, UK

*Corresponding author: Chen Y Department of Physics, Scottish Universities Physics Alliance, University of Strathclyde, 107 Rottenrow, Glasgow G4 0NG, UK. Tel: +44 (0)141 548 3087 Email: y.chen@strath.ac.uk

Received: April 10, 2024 Accepted: May 08, 2024 Published: May 15, 2024

Abstract

Small Gold Nanorods (SGNRs) are beneficial for photothermal therapy owing to their exceptional properties such as high binding and internalization rate into cells, as well as efficient heat generation. We have functionalized small gold nanorods with SYL3C aptamer to target EpCAM-expressed cancer cells. A higher binding rate was observed in cancer cells with over-expressed EpCAM (PC3, FLO-1 and MCF-7) than the non-tumour cells (HEK293), indicating specific binding of the nanoprobes. Z-stack fluorescence microscopy analysis revealed that the nanoprobes bind to the cell membrane of FLO-1 and MCF-7 cancer cells. It was found that SYL3C nanoprobes of different sizes introduced more death in FLO-1 cells than in HEK293 cells and the death rate of FLO-1 treated with small gold nanorod-based SYL3C nanoprobe was significantly higher than that treated with large gold nanorod-based nanoprobes. These findings demonstrate an enhanced efficacy of aptamer functionalized small gold nanorods in photothermal therapy resulting from an increased affinity to EpCAM expressed cancer cells and the enhanced photothermal effect of the small gold nanorods, thus providing insight into the development of gold nanoprobes for efficient photothermal therapy of cancer.

Keywords: Gold nanorods; Epithelia cell adhesion molecule (EpCAM); SYL3C; Photothermal therapy; Aptamer

Introduction

In the field of photothermal therapy, the use of contrast agents with high heat conversion efficiency and targeting capabilities is desirable for enhancing treatment efficacy while minimizing side effects. Gold Nanorods (GNRs) have emerged as a good candidate because of their surface plasmon enhanced photothermal effect and shape dependent tunable optical properties [1-5]. Especially Small Gold Nanorods (SGNRs) functionalized with targeting agents of high binding affinity and specificity for cancerous cells provide a promising solution [6,7]. Compared to Large Gold Nanorods (LGNRs), which exhibit a length and width greater than 40 nm and 10 nm, respectively, the SGNRs with a length of less than 20 nm and a width of less than 10 nm exhibit larger binding and internalization rates, higher absorption-to-extinction ratio and greater heat generation [8,9]. In addition, the photothermal effect of SGNRs is less sensitive to the excitation wavelength and can generate a high temperature rise even at off-resonance excitation, thus more beneficial than LGNRs for photothermal applications in biological systems [10]. These advantages, along with biocompatibility, deep tissue penetration, photostability and large surface area-to-volume ratio [11,12], make SGNRs ideal for targeting receptors, delivering therapeutic drugs, and photothermal therapy [13,14]. Gold nanorods have shown potential in the photothermal therapy of cancer because of their enhanced heat generation capabilities. Recent studies have demonstrated that GNRs kill cancer cells [15,16]. For example, Vu et al demonstrated that a GNR based nanocomposite destroyed 70% of OML-1oral cancer cells under photoexcitation [17]. Doxorubicin loaded GNR under laser excitation were found to simultaneously enhance drug release and induce 93% of HepG2 cell necrosis [18]. The size of GNRs influence their photothermal effect [10,13]. We have demonstrated recently that the SGNRs have higher photothermal effect than the LGNRs in a mimic extracellular environment [10]. In addition, it has been reported that SGNRs showed much higher macrophage uptake and negligible cytotoxicity in comparison with LGNRs to form healthy BSA-coated SGNR-laden-macrophages that exhibited significantly improved photothermal conversion in the tumour [19]. Targeting of cancer cells could be challenging due to the heterogeneity of extracellular matrix. Gold nanorods functionalized with targeting ligands have shown higher cellular uptake and specificity for cancerous cells, suggesting that such targeting ligands could reduce the adverse effects on healthy cells [20]. It was found that integrin-targeting gold nanoparticles assisted plasmonic photothermal therapy caused a cancer cell motility decrement resulting from cytoskeletion transformation and inhibit metastasis [21]. Pitsillides et al have reported effective thermal-induced activation of cell death using anti-CD-8-labeled gold nanoparticles for selective targeting [21]. Despite their potential, research in developing nanoprobes based on functionalized SGNRs with targeting ligands such as aptamer has been limited.

Aptamers, are synthetic single-stranded biological molecules created through Systematic Evolution of Ligands by Exponential enrichment (SELEX) from either a DNA or RNA. Aptamers bind to a variety of targets including proteins, nucleic acids and metal ions and have been utilized to transport therapeutic agents, target RNAs and proteins, detect disease biomarkers and contaminants in food [22-26]. Aptamers are non-immunogenic, non-toxic, and have small sizes (1.2 nm-3 nm) for effective binding and deep tissue penetration. DNA aptamers are preferred in most clinical applications due to their stability and resistance to nuclease degradation [27]. The SYL3C aptamer, is a dual-loop hairpin DNA, that binds to epithelia cell adhesion molecule (EpCAM) expressed on the cell membrane of cells of epithelia origin [23-26]. EpCAM over-expression is common in prostate cancer, breast cancer, colorectal cancer and oesophagus cancer [23,28-31]. SYL3C aptamer has been found to bind to EpCAM over-expressed cancer cells with high affinity and specificity but not to non-EpCAM over-expressed cells [29]. Gold nanoparticles functionalized with SYL3C have shown high efficiency and specificity in capturing circulating tumour cells with high levels of EpCAM over-expression [32,33]. SYL3C aptamer staining was found to detect 98% EpCAM over-expression in both oesophagus squamous cell carcinoma and oesophagus adenocarcinoma, but not in normal oesophagus epithelium[34].

Herein, we reported for the first time the SYL3C aptamer functionalized small gold nanorods to target EpCAM over-expressed cancer cells for photothermal therapy. This study investigated the efficacy of SYL3C-functionalized SGNRs in targeting EpCAM-overexpressed cancer cells and the impact of size on their photothermal efficiency. The findings provide important insight into the development of small gold nanorod-based nanoprobes for improved photothermal therapy.

Experimental Section

Materials

All chemicals were used as received without further purification. Chloroauric acid (HAuCl4, 49%), Hexadecyltrimethylammonium Bromide (CTAB, 99%), Ascorbic Acid (AA), Sodium borohydride (NaBH4, 99.8%), Silver nitrate (AgNO3), Dodecanethiol (DDT, 98%), Mercaptohexanoic Acid (MHA, 99.8%), Acetone (99.9%), Isopropanol (99.5%), Toluene (99.8%) and methanol were purchased from Sigma Aldrich while Hydrochloric Acid (HCL) was purchased from Fluka.

The SYL3C aptamer and the cDNA were purchased from Sigma Aldrich. To confirm the successful functionalization of the aptamer, SYL3C was labelled with Cy3.

Cy3-SYL3C aptamer:

5’[ThiC6]AAAAAACACTACAGAGGTTGCGTCTGTCCCACGTTGTCATGGGGGGTTGGCCTG[Cy3]-3’,

cDNA:

5’-CAGGCCAACCCCCCATGACAACGTGGGACAGACAGACGCAACCTCTGTAGTG-3’.

Synthesis of Gold Nanorods

Large gold nanorods were synthesized using a reported protocol [35]. Two samples of the small gold nanorods (SGNR1 and SGNR2) were synthesized using our modified silver assisted seed-mediated growth method [36]. Briefly, the seed solution was prepared by adding HAuCl4 to a solution of CTAB. Thereafter, a freshly prepared ice-cold NaBH4 solution was added to the mixture and stirred with a magnetic stirrer for 2-3 min until the seed solution turned a dark brown color. The solution was incubated at room temperature for 2hr for gold seeds growth before use. To prepare the growth solutions, HAuCl4, AgNO3 and HCL were added to CTAB solution. After thorough mixing, AA was added. Finally, the seed solution was added to the growth solution. Table S1 and S2 list all the reagents used for the preparation of LGNR, SGNR1 and SGNR2.

Ligand Exchange and Functionalization of Gold Nanorods

Ligand exchange and functionalization of gold nanorods were performed using protocols described in our previous works [35,36]. Briefly, CTAB on as made gold nanorods was replace with MHA using a round trip ligand exchange processes. The pellets of ligand-exchanged gold nanorods were suspended in TBE buffer. Following the ligand exchange, the gold nanorods were functionalized with thiolated SYL3C aptamer via a salting process according to a previous protocol [35-37]. The thiolated aptamer was activated with tris (2-carboxyethyl) phosphine hydrochloride (TCEP, 10 μl). The aptamer was conjugated with gold nanorods in a molar ration of 400:1 using a previously reported salt aging procedure [35-37]. The conjugates were washed at 4°C and resuspended in phosphate buffer after centrifuging.

Cell Sample Preparation

Prostate cancer cell line, PC3, as EpCAM positive cell, and a non-tumour human kidney cell line, HEK293, as EpCAM negative cell were used to evaluate the specificity of the small gold nanorod based SYL3C aptamer nanoprobe. Both PC3 and HEK293 cell lines were seeded at 1.5 x 106 cells per well in a 6-well plate in a Dulbecco’s Modified Eagle’s Medium (DMEM) media containing FBS (10%) and penicillin-streptomycin (5.5ml). Both PC3 and HEK293 cells were incubated with 0.1 nM SGNR2-SYL3C nanoprobes or SGNR2-MHA for 4 hours in separate wells. Following the incubation, the cells were centrifuged at 1400 rpm for 5 minutes and re-suspended in PBS buffer for flow cytometry. Furthermore, human esophagus adenocarcinoma cell line, FLO-1 and breast cancer cell line, MCF-7 were chosen to investigate the time dependent uptake and binding site of SYL3C aptamer functionalized small gold nanorods on other cancer cells of epithelia origin. FLO-1 and MCF-7 cancel cell lines with similar cell density as above were cultured on coverslips suspended in the DMEM media in 24 well plate overnight after which the cells were treated with SGNR2-SYL3C nanoprobes and SGNR2-MHA for 0.5 hours, 1 hour and 1.5 hours respectively. After the incubation, the FLO-1 and MCF-7 cell samples were further treated with 4, 6-Diamidine-2-phenylindole (DAPI) to stain the cell nuclei.

Biocompatibility Study of SGNR1-SYL3C Nanoprobe

The biocompatibility of SYL3C based nanoprobes was evaluated by incubating the SGNR1-SYL3C nanoprobe with FLO-1, MCF-7 and HEK293 cell lines in comparison with the SGNR1-MHA. Specifically, 8.0 x 105cells of each cell line seeded in 2 ml of the DMEM medium were incubated with 0.4 nM of the SGNR1-SYL3C nanoprobe and the SGNR1-MHA for 3 hours. Thereafter, the cells were washed with PBS, tyrpsinized, centrifuged and re-incubated in 1 ml of the fresh DMEM medium for 24 hours to assess cell viability.

Sample Preparation and Photothermal Effect Study

FLO-1 and the HEK293 cell lines were cultured in the DMEM media and incubated with the 0.4 nM of SGNR1-SYL3C, SGNR1-MHA, LGNR-SYL3C, and LGNR-MHA for 1.5 hours. Thereafter, the cells were washed with PBS and re-suspended in 300 μl of red phenol free DMEM medium for photo-excitation. Then, 20 μl of the treated cell samples and un-treated cells were placed on an improvised chamber made from the lid of a 1.5 ml Eppendorf tube for excitation.

The cell samples treated with the SGNR- SYL3C and SGNR-MHA were excited on resonance to the surface plasmons resonance of the SGNR1 (774 nm with laser power density 0.346±0.060W/cm2) for enhanced heat generation for 1 min. On the other hand, the cell samples treated with the LGNR nanoprobe, LGNR-MHA and the control cell samples were excited on resonance to the surface plasmon resonance of LGNR (753 nm with laser power density 0.306±0.050W/cm2) for 1 min. After laser exposure, 10 μl of the laser treated cell samples were mixed with 5 μl trypan blue (0.4%) on a glass slide to identify viable and dead cells. The trypan blue treated cell samples were imaged with a confocal microscope using the 10x objective lens. The quantities of viable and dead cells were determined by casting the entire laser treated cells mixed with trypan blue on a hemocytometer for counting. Cell necrosis was determined according to equation 1.

where the total number of counted cells is the sum of live and dead cells from the photoexcited cell lines. Standard deviation was calculated from the four replicas.

Optical Characterization of Gold Nanoprobes

The extinction spectra of the SGNR1, SGNR2 and LGNR samples were measured with a UV-visible spectrophotometer (Lambda 2, Perkin Elmer).

Flow cytometry analysis was performed using a A MoFlo XDP cytometer (Beckman Coulter, Brea, CA) at 532 nm excitation. Fluorescence imaging was performed using a confocal microscope (Leica Microsystems SP8). The samples were excited at 405 nm for DAPI and 561 nm for Cy3.

Results and Discussion

Synthesis of SYL3C Functionalized Gold Nanorods

Gold nanorods (SGNR1, SGNR2 and LGNR) were synthesized with Longitudinal Surface Plasmon Resonance (LSPR) at 789 nm, 679 nm and 760 nm respectively. The average dimensions of these GNRs were determined from SEM images and listed in table 1 together with their LSPR.