Outcome and Risk Factors for Acquisition of Multi-Drug Resistant Organisms among COVID-19 Patients, A Single Center Case Control Study

Research Article

Austin J Infect Dis. 2023; 10(1): 1079.

Outcome and Risk Factors for Acquisition of Multi-Drug Resistant Organisms among COVID-19 Patients, A Single Center Case Control Study

Zaina AL Maskari¹*, Sathiya M Panchatcharam², Amal AL Tai¹, Warda AL Habsi¹ and Khadija AL Zadjali¹

1Infection Prevention and Control Department, Royal Hospital, Oman

2B.S., Research Section, Oman Medical Specialty Board

*Corresponding author: Zaina AL Maskari Infection Prevention and Control Department, Royal Hospital, Oman.

Received: November 24, 2022; Accepted: January 23, 2023; Published: January 30, 2023

Abstract

Introduction: Several recent reports have described an increase in multidrug-resistant organisms (MDROs) during the COVID- 19 pandemic, and multiple factors identified.

Objectives: The primary objectives of the study are to determine the incidence of MDROs among hospitalized COVID-19 patients, the risk factors leading to infection or colonization with MDROs among these patients and the determinants of mortality among infected patients. The secondary objective is to study risk factors for mortality among the study cohort.

Method: A retrospective case-control study included all patients screened for MDROs on admission or detected later to have a positive sample for MDROs during their hospital stay (April-September 2020). Associations were tested using chi-square and independent t-tests. For the adjusted analysis, Multivariate logistic regression applied. P<0.05 was considered as statistical significance.

Result: The total number of patients included was 313. 33.2% (n=104) were MDRO-infected or colonized patients, and 66.8% (n=209) were controls. The incidence density during the study period of MDROs was 16.7 per 1000 patient days, and the incidence was 17. 9 per 100 admissions. The monthly incidence density of MDROs ranged from 7.0 per 1000 patient days to 30.6 per 1000 patient days and steadily increased. In univariate analysis, the length of ICU stays P <0.001, length of hospital stay P <0.001, receiving ventilation P0.001, having urinary catheter P0.004, tracheostomy P<0.001, NGT in situ P 0.001, receiving more than four antibiotics P<0.001 and having comorbidities P 0.001 were risk factors for acquiring MDROs. Comorbidities were independent factors for MDRO acquisition (OR 3.61, CI 1.37-9.61, P0.010). Mortality was higher among those with MDRO infection (50%, n=30) than those with colonization (31.8%, n=14). Only receiving a few antibiotics was related to worse outcomes (OR 3.09, CI; 1.13-8.44, P0.028). The independent risk factors for mortality among the study cohort were age (OR 1.087 CI 1.06 to 1.1, P <0.001), and acute dialysis (OR 4.392, CI 1.82-10.61, P 0.001).

Conclusion: The acquisition of MDROs was not associated with worse outcomes among COVID-19 patients, although mortality was significantly higher among infected patients than colonized patients. Implementing strict infection prevention and control strategies is vital to prevent colonization and progression to infection among colonized patients.

Keywords: COVID-19; MDRO; Risk factors; Mortality

Introduction

Several recent reports have described an increase in multidrug- resistant organisms (MDROs) during the COVID-19 pandemic [1]. Dona` D et al. and others highlighted factors leading to the surge of MDROs among COVID-19 patients, such as high use of broad-spectrum antibiotics in the hospital setting, high rates of admission, shortages of staff and personal protective equipment (PPE), and high-acuity patients with prolonged stays in overcrowded facilities. Moreover, severe COVID-19, which particularly affects elderly patients with multiple comorbidities, may be important in determining changes in colonization pressure [2].

A recent study conducted in intensive care units (ICUs) in 88 countries showed that although only 54% (8135/15 165) of patients had suspected or proven bacterial infection, 70% (10 640/15 165) of them had received at least one antibiotic either for prophylaxis or treatment purposes [3].

M. Polly et al. found that the overall identification of MDROs increased by 23%(P<.005) during COVID-19, and the overall pathogen analysis shows significant increases in infection by CRAB (carbapenem-resistant Acinetobacter baumannii) and MRSA (Methicillin-resistant Staphylococcus aureus) (+108.1%,p<0.005:+94.7%p<0.005) respectively, but not CRE (Carbapenem-resistant Enterobacteriaceae), CRP (Carbapenem- resistant Pseudomonas aeruginosa) or VRE (Vancomycinresistant Enterococcus) which might indicate outbreaks during the pandemic [4].

Karruli et al. reported that fifty per cent of patients developed an MDR infection during ICU stay after a median time of 8, MDR infections were linked to a higher length of ICU stay (p = 0.002), steroid therapy (p = 0.011), and associated with a lower ICU mortality (odds ratio: 0.439,95% confidence interval: 0.251–0.763; p < 0.001) [5].

The primary objectives of the study are to determine the incidence of MDROs among hospitalized COVID-19 patients, the risk factors leading to infection and/or colonization with MDROs among these patients and the determinants of mortality among infected patients. The secondary objective is to study risk factors for mortality among the study cohort.

Method

Background

The study was conducted in a tertiary care hospital, a retrospective case-control study among COVID-19 patients admitted in the first six months of the pandemic (April-September 2020). The hospital has 800 beds and an adult general medical/surgical ICU with a bed capacity of 12 beds with a step-down care unit of 12 beds. During the COVID-19 crisis, the general ICU for non- COVID-19 patients contracted to 8 beds capacity caring for critical non-COVID-19 patients. Another surgical ICU was converted to a COVID-19 critical unit, where the capacity reached 50 beds at the peak of the pandemic. In addition, stable confirmed COVID- 19 patients were admitted to general ambulatory isolation wards that were opened for this purpose according to the need. Active MDROs surveillance cultures were collected for all admitted COVID-19 patients, which included MRSA, CRE, MDRA [Multi-Drug Resistant Acinetobacter baumannii] and Candida auris. The MDRO surveillance was initially applied to critical COVID-19 patients only and expanded in May 2020 to include stable COVID-19 patients.

Population

The study included all positive COVID-19 patients admitted to Royal Hospital (RH) in COVID-19 ambulatory wards (noncritical patients) and Critical COVID-19 wards between April to September 2020 and had a positive screening sample or clinical sample for MDROs during their COVID-19 care admission. COVID-19 patients who were not screened or did not grow any MDRO from clinical samples were excluded. Controls were chosen from COVID-19 patients who had negative active surveillance culture with a patient-control ratio of 1:2. No matching was applied.

Definitions

A case was defined as a positive COVID-19 patient who tested positive for one or more of the MDRO from either screening or a clinical sample or both during their hospital stay in the study period.

A control was defined as a COVID-19 patient admitted to the hospital during the study period and tested negative for the MDRO screening test and did not have a positive clinical sample for MDRO throughout their hospital stay.

Hospital-acquired was defined as a positive screening culture for MDRO or clinical samples after 48 hours of admission to our hospital.

Other hospital acquisition was defined as a positive culture for MDRO detected in less than 48 hours of hospital transfer or having a history of admission within that hospital in the last three months.

Community-acquired was defined as a positive culture for MDRO from a screening or clinical sample and no recent admissions to healthcare institutions within the last three months.

Multi-Drug Resistant Organisms are bacteria and other microorganisms that have developed resistance to antimicrobial drugs. Common examples of these organisms include: MRSA VRE, CRE, MDRA, MDRP ana C. auris.

Microbiological Method

Active surveillance cultures for MDROs were collected according to the criteria in the hospital policy attached in appendix 1. Screening samples were inoculated into Chromogenic agar. The antimicrobial susceptibility testing in the laboratory is interpreted according to the Clinical & Laboratory Standards Institute (CLSI) with standardized susceptibility testing methods. Multidrug-resistant organisms are alerted by the laboratory using an electronic alert system according to the MDRO definitions for each organism described in ppendix1. The list is then communicated to the infection prevention and control team daily.

The incidence of MDROs was calculated as the number of new MDROs detected divided by the total admission for that month multiplied by 100 admissions, and the incidence density of MDROs was calculated as the number of new MDROs detected divided by patient days for that month multiplied by 1000. The MDRO detected for each patient is counted once only.

Data collection

Demographic data, risk factors and length of hospital stay where collected from the hospital electronic system (AL Shifa+).

Statistical analysis

All the collected information was analyzed using IBM SPSS Statistics 28.0 (IBM Corp. Released 2021. IBM SPSS Statistics for Windows, Version 28.0. Armonk, NY: IBM Corp). For descriptive purposes, categorical information was presented using frequency and percentages, and continuous information was presented using mean with standard deviation. Categorical associations were made using the chi-square test, and continuous information with categorical was tested using the independent ‘t-test. Significant factors and p<0.2 were taken into multivariate logistic regression for the adjusted analysis. A P-value of <0.05 was considered statistically significant.

Research ethics

The study was approved by the Hospital scientific. research ethics (SRC#91/2020).

Results

The total number of patients included was 313, 104 (33.2%) were MDRO-infected or colonized cases, and 209 (66.8%) were controls. The mean age was 55.7±16.03, 69.6% (n= 218) were males, and 30.4% (n=95) were females. One thousand one hundred thirty-nine screening samples were processed during the study period. Only 38 tests came positive (positivity rate = 3.3%).

Significant risk factors for acquiring MDROs among COVID- 19 patients in univariate analysis were the length of ICU stay P<0.001, length of hospital stay P<0.001, receiving ventilation P0.001, having urinary catheters P0.004, having tracheostomy P<0.001, NGT in situ P0.001, receiving more than four antibiotics P<0.001 and having co-morbidities P <0.001. However, in multivariate analysis, only co-morbidities were significant OR3.61, CI1.37-9.61, P0.010 (Table 1).